Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| deoB-1 | deoB-2 | SHYC_00740 | SHYC_01730 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.900 |
| deoB-1 | deoC-1 | SHYC_00740 | SHYC_00735 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.978 |
| deoB-1 | nudF | SHYC_00740 | SHYC_07075 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.904 |
| deoB-1 | pdp | SHYC_00740 | SHYC_03590 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Pyrimidine-nucleoside phosphorylase; Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.857 |
| deoB-1 | pgcA | SHYC_00740 | SHYC_09090 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.911 |
| deoB-1 | pnp-1 | SHYC_00740 | SHYC_00725 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Purine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.908 |
| deoB-1 | prs | SHYC_00740 | SHYC_11245 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.908 |
| deoB-1 | rbsK | SHYC_00740 | SHYC_01210 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.903 |
| deoB-1 | rpiA | SHYC_00740 | SHYC_02760 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.944 |
| deoB-1 | tkt | SHYC_00740 | SHYC_07675 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.912 |
| deoB-2 | deoB-1 | SHYC_01730 | SHYC_00740 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| deoB-2 | deoC-1 | SHYC_01730 | SHYC_00735 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.936 |
| deoB-2 | nudF | SHYC_01730 | SHYC_07075 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.904 |
| deoB-2 | pdp | SHYC_01730 | SHYC_03590 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Pyrimidine-nucleoside phosphorylase; Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.857 |
| deoB-2 | pgcA | SHYC_01730 | SHYC_09090 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.911 |
| deoB-2 | pnp-1 | SHYC_01730 | SHYC_00725 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Purine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.756 |
| deoB-2 | prs | SHYC_01730 | SHYC_11245 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.908 |
| deoB-2 | rbsK | SHYC_01730 | SHYC_01210 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.903 |
| deoB-2 | rpiA | SHYC_01730 | SHYC_02760 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.944 |
| deoB-2 | tkt | SHYC_01730 | SHYC_07675 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.912 |
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