Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJC96042.1Peptidase U32 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)    
Predicted Functional Partners:
AJC96041.1
O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.941
udk
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.863
AJC96043.1
Peptidase U32 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.845
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.764
AJC96863.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0741 family.
  
     0.731
AJC96040.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0473 family.
       0.660
pxpB
Allophanate hydrolase subunit 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.624
AJC96047.1
Allophanate hydrolase subunit 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.624
accB-1
acetyl-CoA carboxylase biotin carboxyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.624
accC
acetyl-CoA carboxylase biotin carboxylase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.620
Your Current Organism:
Staphylococcus hyicus
NCBI taxonomy Id: 1284
Other names: ATCC 11249, CCM 2368, CCUG 6509, CIP 81.58, DSM 20459, JCM 2423, LMG 13352, LMG:13352, Micrococcus hyicus, NCTC 10350, S. hyicus, Staphylococcus hyicus hyicus, Staphylococcus hyicus subsp. hyicus
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