STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC96228.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; putative denitrification regulatory protein NirQ. (261 aa)    
Predicted Functional Partners:
AJC96229.1
NorD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
AJC96227.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.885
AJC96226.1
Putative ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.797
brnQ-2
Branched-chain amino acid ABC transporter substrate-binding protein; Component of the transport system for branched-chain amino acids.
  
    0.780
traP
Signal transduction protein TRAP; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
AJC95554.1
YwpF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.581
AJC96586.1
Putative RNA ligase or phosphoesterase; Similar to 2'-5' RNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 2H phosphoesterase superfamily. YjcG family.
 
     0.560
AJC96977.1
Orn Lys Arg decarboxylase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.556
sucA
2-oxoglutarate dehydrogenase E1 component; E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2).
 
   
 0.513
AJC95517.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.463
Your Current Organism:
Staphylococcus hyicus
NCBI taxonomy Id: 1284
Other names: ATCC 11249, CCM 2368, CCUG 6509, CIP 81.58, DSM 20459, JCM 2423, LMG 13352, LMG:13352, Micrococcus hyicus, NCTC 10350, S. hyicus, Staphylococcus hyicus hyicus, Staphylococcus hyicus subsp. hyicus
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.