Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| deoB-1 | deoB-2 | SHYC_00740 | SHYC_01730 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.900 |
| deoB-1 | nudF | SHYC_00740 | SHYC_07075 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.904 |
| deoB-1 | pgcA | SHYC_00740 | SHYC_09090 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.911 |
| deoB-1 | prs | SHYC_00740 | SHYC_11245 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.908 |
| deoB-1 | rbsK | SHYC_00740 | SHYC_01210 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.903 |
| deoB-1 | rpiA | SHYC_00740 | SHYC_02760 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.944 |
| deoB-1 | tkt | SHYC_00740 | SHYC_07675 | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.912 |
| deoB-2 | deoB-1 | SHYC_01730 | SHYC_00740 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| deoB-2 | nudF | SHYC_01730 | SHYC_07075 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.904 |
| deoB-2 | pgcA | SHYC_01730 | SHYC_09090 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.911 |
| deoB-2 | prs | SHYC_01730 | SHYC_11245 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.908 |
| deoB-2 | rbsK | SHYC_01730 | SHYC_01210 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.903 |
| deoB-2 | rpiA | SHYC_01730 | SHYC_02760 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.944 |
| deoB-2 | tkt | SHYC_01730 | SHYC_07675 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.912 |
| glmU | prs | SHYC_11250 | SHYC_11245 | Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.970 |
| glmU | rplY | SHYC_11250 | SHYC_11240 | Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.732 |
| nudF | deoB-1 | SHYC_07075 | SHYC_00740 | ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphopentomutase; Catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.904 |
| nudF | deoB-2 | SHYC_07075 | SHYC_01730 | ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.904 |
| nudF | pgcA | SHYC_07075 | SHYC_09090 | ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.903 |
| nudF | prs | SHYC_07075 | SHYC_11245 | ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.915 |
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