STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_00415Mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (aminomethyl-transferring); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.651
WA1_00375
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.641
WA1_00410
Potassium channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.630
WA1_00405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.493
WA1_00420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
WA1_00425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
WA1_24765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
WA1_00355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.459
WA1_39065
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
 0.448
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.