STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_00540Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)    
Predicted Functional Partners:
WA1_00535
Glucan 1,4-alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.765
WA1_37630
Carbamoylphosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.638
WA1_23110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.597
WA1_00545
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
    
  0.579
WA1_50405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the methyltransferase superfamily.
 
   
 0.532
WA1_04860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-glutamate cyclase family.
  
  
 0.519
WA1_04900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the D-glutamate cyclase family.
  
  
 0.519
WA1_21375
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.509
WA1_02530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
WA1_14475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.