STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_00680S-layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)    
Predicted Functional Partners:
WA1_20695
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.964
WA1_35590
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.935
WA1_05235
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.826
WA1_01915
Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.812
WA1_16105
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.810
WA1_04805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.804
WA1_30680
Polysaccharide pyruvyl transferase CsaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
WA1_29765
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.708
WA1_23110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.674
WA1_29130
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.674
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.