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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_00705PAP fibrillin; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
WA1_24170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.703
WA1_37865
Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
WA1_25745
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.664
WA1_09465
Pheophorbide a oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
WA1_16695
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
WA1_02090
CRISPR-associated protein Csm3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
WA1_31455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.616
WA1_49160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.606
WA1_09440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
WA1_00710
Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.588
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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