Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
WA1_00840RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)    
Predicted Functional Partners:
WA1_00835
Enediyne biosynthesis protein UnbU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.988
WA1_00825
4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.945
WA1_00830
Beta keto-acyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.945
WA1_00845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.875
WA1_00820
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
WA1_43725
D-alanyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
WA1_43715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.712
WA1_17655
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.626
WA1_07695
PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.615
WA1_00815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.588
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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