Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_01535Type I-B CRISPR-associated protein Cas7/Cst2/DevR; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)    
Predicted Functional Partners:
WA1_23450
Type I-MYXAN CRISPR-associated protein Cas5/Cmx5/DevS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.758
WA1_01540
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.700
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
     
 0.620
WA1_01520
CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.606
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
       0.513
WA1_01530
Type I-MYXAN CRISPR-associated protein Cmx8; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
WA1_23435
CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.429
WA1_12520
Type I-D CRISPR-associated helicase Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.416
WA1_35965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.416
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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