Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_01720Phage shock protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)    
Predicted Functional Partners:
WA1_40560
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.721
WA1_01725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.701
WA1_10060
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.672
WA1_45800
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.668
WA1_09965
Glutathione S-transferase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.664
WA1_17655
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.635
WA1_01460
PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.625
WA1_09910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.625
WA1_10575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.625
WA1_11740
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.625
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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