Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| WA1_01805 | WA1_28955 | WA1_01805 | WA1_28955 | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.644 |
| WA1_01805 | apt | WA1_01805 | WA1_29250 | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.638 |
| WA1_01805 | rbsK | WA1_01805 | WA1_01800 | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.913 |
| WA1_16340 | rbsK | WA1_16340 | WA1_01800 | Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.899 |
| WA1_24810 | deoC | WA1_24810 | WA1_12260 | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.764 |
| WA1_24810 | prs | WA1_24810 | WA1_28885 | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphoribosylpyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.859 |
| WA1_24810 | purA | WA1_24810 | WA1_44020 | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.474 |
| WA1_24810 | rbsK | WA1_24810 | WA1_01800 | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.853 |
| WA1_24810 | tal-2 | WA1_24810 | WA1_25110 | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family. | 0.846 |
| WA1_28955 | WA1_01805 | WA1_28955 | WA1_01805 | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.644 |
| WA1_28955 | apt | WA1_28955 | WA1_29250 | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.638 |
| WA1_28955 | rbsK | WA1_28955 | WA1_01800 | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.913 |
| apt | WA1_01805 | WA1_29250 | WA1_01805 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.638 |
| apt | WA1_28955 | WA1_29250 | WA1_28955 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.638 |
| apt | prs | WA1_29250 | WA1_28885 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Phosphoribosylpyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.600 |
| apt | purA | WA1_29250 | WA1_44020 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.832 |
| apt | rbsK | WA1_29250 | WA1_01800 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.875 |
| apt | rpiA | WA1_29250 | WA1_03845 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.615 |
| deoC | WA1_24810 | WA1_12260 | WA1_24810 | 2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.764 |
| deoC | prs | WA1_12260 | WA1_28885 | 2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | Phosphoribosylpyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.800 |
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