STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_02090CRISPR-associated protein Csm3; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)    
Predicted Functional Partners:
WA1_02095
Type III-B CRISPR-associated protein Cas10/Cmr2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.987
WA1_02060
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.792
WA1_02050
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.788
WA1_02085
CRISPR-associated protein Csx10; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.788
WA1_48095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.788
WA1_02075
CRISPR-associated protein Csm3; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.783
WA1_02080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
WA1_09490
Type III-B CRISPR-associated protein Cas10/Cmr2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.765
WA1_26640
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.765
WA1_36305
CRISPR-associated protein Cmr2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.765
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.