STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_02425Magnesium chelatase ATPase subunit D; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. (724 aa)    
Predicted Functional Partners:
WA1_01260
Magnesium chelatase; Catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
WA1_42630
Cobalamin biosynthesis protein CobN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
WA1_49000
PIN domain-containing protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
WA1_08590
Catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.981
WA1_13470
Magnesium chelatase ATPase subunit I; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
0.980
WA1_08800
Mg-chelatase subunit ChlD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.972
WA1_07910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.950
WA1_08540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.943
WA1_43090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.943
WA1_46150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.943
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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