Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
WA1_03020Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (192 aa)    
Predicted Functional Partners:
WA1_18515
Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
  0.932
WA1_33395
Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
  0.898
WA1_09850
Hydroxyquinol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.756
WA1_33195
4,5-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
WA1_44010
Adenylyl-sulfate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.653
WA1_33300
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
WA1_07385
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.584
WA1_03025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.566
WA1_03015
NADPH:quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
WA1_03030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.551
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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