Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_03215DNA-binding protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)    
Predicted Functional Partners:
WA1_34205
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.727
WA1_13500
DNA uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.643
WA1_41345
DNA uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.643
WA1_03220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.550
WA1_28575
Competence/damage-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.
      
 0.536
WA1_09455
Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.530
WA1_16290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  
 0.509
WA1_07050
SMF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.455
WA1_31460
DNA processing protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.455
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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