Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
WA1_04045Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)    
Predicted Functional Partners:
WA1_04050
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.947
WA1_18280
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
 
  0.823
WA1_04620
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
WA1_27895
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
WA1_35380
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
WA1_44475
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
WA1_23320
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.517
WA1_04055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.495
WA1_11935
Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.439
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
  0.437
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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