STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_04320Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (400 aa)    
Predicted Functional Partners:
WA1_04345
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.966
WA1_04325
NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.954
WA1_29750
Capsule biosynthesis protein CapD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.936
WA1_04355
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.880
WA1_04330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.867
WA1_04340
Erythromycin biosynthesis sensory transduction protein eryC1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 
0.850
WA1_13345
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.841
WA1_08390
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.835
WA1_25295
dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.808
WA1_04315
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.784
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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