Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_04415Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)    
Predicted Functional Partners:
WA1_04425
Nitrogenase-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.
 
     0.810
WA1_04420
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
nifW
Nitrogenase stabilizing/protective protein; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
     0.755
WA1_04390
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.692
WA1_09065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.686
WA1_34655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.674
WA1_12875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.655
WA1_41515
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.655
WA1_44810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
WA1_35055
Nitrogen fixation protein NifZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.612
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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