STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_04870CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)    
Predicted Functional Partners:
WA1_37050
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.556
WA1_04920
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.549
vapC-3
Nucleic acid-binding protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.499
WA1_04880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
WA1_04215
Addiction module antidote protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.492
WA1_51025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
WA1_04865
Streptothricin acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.438
cpcS-2
Phycocyanobilin lyase; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.430
WA1_35765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.425
WA1_38050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.