Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_05020Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
WA1_05025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
WA1_27525
Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.658
WA1_05015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
WA1_06780
Tryptophan halogenase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.445
WA1_26140
XisH protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
WA1_36015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.443
WA1_36025
Nitric oxide synthase; Catalyzes the production of nitric oxide. Belongs to the NOS family. Bacterial NOS oxygenase subfamily.
    
 0.443
WA1_33975
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
WA1_33990
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
WA1_33970
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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