STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_05165Transposase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
WA1_46690
Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.
  
     0.759
WA1_29900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
WA1_44180
Phycocyanobilin lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
WA1_35325
Photosystem II protein PsbQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.705
WA1_13220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
WA1_28750
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.696
WA1_21305
MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
WA1_41595
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.688
WA1_25350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.686
WA1_17775
Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.683
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.