STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_05340Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)    
Predicted Functional Partners:
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.828
WA1_39220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.743
WA1_45880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
WA1_25825
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
WA1_25725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
WA1_46700
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
pcxA
Proton extrusion protein PcxA; Involved in light-induced Na(+)-dependent proton extrusion. Also seems to be involved in CO(2) transport; Belongs to the CemA family.
  
     0.691
WA1_22785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
WA1_32455
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
cpcS
Chorismate-binding protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.678
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.