STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_06905Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (90 aa)    
Predicted Functional Partners:
WA1_05360
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_08135
Cyclomaltodextrin glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_11515
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_17020
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_20205
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_06910
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.881
WA1_05705
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.771
WA1_45800
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.713
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
   
 0.595
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.