STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_07130Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 1 family. (123 aa)    
Predicted Functional Partners:
WA1_35590
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.863
WA1_09160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.829
tal-2
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
 
 0.810
tal-4
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.810
WA1_04295
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.807
WA1_46775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.805
WA1_46780
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.805
WA1_24810
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.783
WA1_42665
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.779
WA1_43115
UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
 0.778
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.