STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_07390Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)    
Predicted Functional Partners:
WA1_02425
Magnesium chelatase ATPase subunit D; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 0.856
WA1_02355
poly(A) polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.698
WA1_22175
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.698
WA1_36365
Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.698
WA1_45380
Polynucleotide kinase-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.698
WA1_34425
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.692
WA1_38590
FAD-binding monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.661
WA1_41930
2-octaprenyl-6-methoxyphenyl hydroxylase; Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.661
WA1_46985
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.655
WA1_07385
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.625
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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