Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_07700Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)    
Predicted Functional Partners:
WA1_07705
Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.614
WA1_33975
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.534
WA1_33970
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
WA1_31990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
WA1_22755
K+ transport protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
WA1_04700
Endonuclease/exonuclease/phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.430
WA1_09140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.427
WA1_17870
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.409
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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