Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_07830Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (65 aa)    
Predicted Functional Partners:
WA1_25870
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.666
WA1_24575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.631
WA1_24595
DNA-binding protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.631
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.614
WA1_07825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.568
WA1_07820
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.553
WA1_07815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.517
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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