STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_08425Swarming motility protein ybiA; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)    
Predicted Functional Partners:
WA1_36500
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
 
   
 0.975
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
 
   
 0.784
WA1_48890
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.
  
 
 
 0.782
WA1_29110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.767
WA1_00160
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.731
WA1_08500
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.731
WA1_19855
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.731
WA1_21840
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.731
WA1_37750
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.731
WA1_40790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.731
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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