STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_08500AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)    
Predicted Functional Partners:
WA1_20035
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.802
glpK
Helix-turn-helix transcriptional regulator; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
  0.745
WA1_08425
Swarming motility protein ybiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.731
WA1_41275
Swarming motility protein ybiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.731
WA1_08505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.671
WA1_08510
Hypothetical protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
       0.671
WA1_10395
DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.668
WA1_22230
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.658
WA1_44510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.658
WA1_08515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.648
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.