STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_08615G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)    
Predicted Functional Partners:
WA1_35590
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.931
WA1_04295
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.815
WA1_37705
Heterocyst differentiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.706
WA1_16220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
WA1_39155
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.580
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.554
WA1_41055
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.532
WA1_12660
Fused response regulator/phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
WA1_32960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
WA1_25345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.516
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.