STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_08875Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)    
Predicted Functional Partners:
WA1_10575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.985
WA1_37035
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.984
WA1_17655
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.976
WA1_45800
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.974
WA1_11740
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.970
WA1_24800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
0.968
WA1_09965
Glutathione S-transferase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.967
WA1_44215
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.965
WA1_01460
PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.964
WA1_09910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.963
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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