STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_08885Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)    
Predicted Functional Partners:
WA1_49940
Cadmium-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.985
WA1_28120
Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.975
WA1_44730
Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.975
WA1_44855
Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.975
WA1_49775
Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.975
WA1_03830
Hypothetical protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.928
WA1_10560
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.928
WA1_46605
Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.928
petB
Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
    
 
 0.884
WA1_39060
Cytochrome B6; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.884
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.