STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_09025S-layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OprB family. (641 aa)    
Predicted Functional Partners:
WA1_36305
CRISPR-associated protein Cmr2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.635
WA1_26640
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.628
WA1_29775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.616
WA1_00110
Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
WA1_12280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.575
WA1_27620
Cell division protein FtsQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
WA1_39770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.568
WA1_31735
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
WA1_25885
Phosphopeptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
WA1_26630
Type III-B CRISPR module RAMP protein Cmr4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.