STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_09435Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)    
Predicted Functional Partners:
WA1_09425
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.691
WA1_37920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.584
WA1_37915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.578
WA1_42180
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.572
WA1_06185
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.567
WA1_09440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.519
WA1_36015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.510
WA1_36025
Nitric oxide synthase; Catalyzes the production of nitric oxide. Belongs to the NOS family. Bacterial NOS oxygenase subfamily.
    
  0.510
WA1_44900
Calcium sensor EFh; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.510
psbM
Photosystem II reaction center protein M; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface.
  
     0.497
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.