STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_10595Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
psbV
Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
  
     0.704
WA1_00075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.608
WA1_46700
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
WA1_41725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
petJ
Cytochrome C; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
  
     0.527
psbU
Photosystem II extrinsic protein; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.
  
     0.526
rpmF
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.496
WA1_44155
Phycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.490
WA1_25825
Allophycocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
petJ-2
Cytochrome C6; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
  
     0.466
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.