Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
WA1_11035Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (126 aa)    
Predicted Functional Partners:
WA1_24480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
  0.789
WA1_48585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.736
glpK
Helix-turn-helix transcriptional regulator; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
  0.644
WA1_04965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.633
WA1_20035
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.633
WA1_49170
Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.557
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.543
WA1_11040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.519
rpsI
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.
    
   0.513
WA1_11855
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.511
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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