STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_11665Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (114 aa)    
Predicted Functional Partners:
WA1_03535
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.934
WA1_11660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
WA1_05725
Isonitrile hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.746
WA1_28790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.726
WA1_04790
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.719
WA1_04830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.719
WA1_15870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.695
WA1_03775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.674
WA1_07895
RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
   0.674
sigA
RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.674
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.