STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_11845AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)    
Predicted Functional Partners:
WA1_17590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.817
WA1_42230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.816
WA1_11265
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.609
WA1_11030
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.607
WA1_11485
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.607
WA1_11490
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.607
WA1_40630
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.607
WA1_47800
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.607
WA1_11850
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.481
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.446
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.