STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_11925Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)    
Predicted Functional Partners:
WA1_11930
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
WA1_11915
DNA invertase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.636
WA1_11920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.636
WA1_17720
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
WA1_47295
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
WA1_16215
Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.433
WA1_28615
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.422
WA1_44910
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.413
WA1_37710
Glycosyl hydrolase family 57; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.404
WA1_44925
Transaldolase; Catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.404
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.