STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_12205N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1095 aa)    
Predicted Functional Partners:
WA1_42230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.981
WA1_17590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.976
WA1_09490
Type III-B CRISPR-associated protein Cas10/Cmr2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.752
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.724
WA1_09510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.711
WA1_11030
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.706
WA1_13170
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
WA1_36755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.646
WA1_36725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.627
WA1_39080
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.606
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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