STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-5Twitching motility protein PilT; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (134 aa)    
Predicted Functional Partners:
WA1_41610
Virulence factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.920
WA1_12605
Virulence factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.915
WA1_12425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
WA1_12435
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
WA1_02845
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
vapC-4
Twitching motility protein PilT; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.743
WA1_10525
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
WA1_02800
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
WA1_08455
Nucleic acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
WA1_12440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.