STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_12585Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)    
Predicted Functional Partners:
WA1_12590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.845
WA1_47930
DNA-binding protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.781
WA1_38240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.771
WA1_05490
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.770
WA1_05235
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
WA1_22680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
WA1_36215
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.507
WA1_45695
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.504
WA1_20765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.501
WA1_11130
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.