STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_13265MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)    
Predicted Functional Partners:
WA1_11640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.775
WA1_08795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.666
WA1_38165
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.559
WA1_24340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.493
WA1_03045
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.492
WA1_25090
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
WA1_10670
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.482
WA1_13270
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
WA1_13275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.480
WA1_15530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.466
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.