STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_13335Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)    
Predicted Functional Partners:
WA1_23445
Type I-B CRISPR-associated protein Cas7/Cst2/DevR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
WA1_23435
CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
WA1_25380
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.747
WA1_23430
Type I-MYXAN CRISPR-associated protein Cas6/Cmx6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.727
WA1_04290
Methyltransferase FkbM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
WA1_26500
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.686
WA1_10910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.668
WA1_14555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.668
WA1_25075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.668
WA1_49715
Aquaporin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.668
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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