STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_13500DNA uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)    
Predicted Functional Partners:
WA1_13505
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.860
WA1_41745
Pilus assembly protein PilC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.823
WA1_34205
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.805
WA1_06210
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.712
WA1_26265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
WA1_09455
Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.705
WA1_35875
Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.698
WA1_22845
Pilus assembly protein PilB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.684
WA1_41755
General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.684
WA1_03215
DNA-binding protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.670
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.