STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_13890Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (801 aa)    
Predicted Functional Partners:
WA1_13885
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.906
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
    
 0.779
WA1_18280
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
    
  0.769
WA1_21345
Phycocyanin alpha phycocyanobilin lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
WA1_13895
Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.685
WA1_13880
Chemotaxis protein CheA; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.662
WA1_30965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
WA1_40500
Phycocyanin alpha phycocyanobilin lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
WA1_35955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.632
WA1_01485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.629
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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