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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_14565Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)    
Predicted Functional Partners:
WA1_04965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.760
WA1_20035
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.760
WA1_35800
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.713
WA1_35540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
WA1_01730
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
glpK
Helix-turn-helix transcriptional regulator; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.629
WA1_34590
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OprB family.
  
     0.629
WA1_28120
Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.608
WA1_04185
DDE endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
WA1_15635
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OprB family.
  
     0.593
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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