STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-6Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (149 aa)    
Predicted Functional Partners:
WA1_14680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
WA1_20475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.730
WA1_27255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
WA1_40955
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
WA1_14475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
WA1_14685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.513
WA1_33870
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
WA1_27170
Modification methylase NspV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
WA1_21400
Modification methylase NspV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
WA1_02395
Nucleic acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.