STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_14705Aspartoacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AspA/AstE family. Aspartoacylase subfamily. (295 aa)    
Predicted Functional Partners:
WA1_28940
Acetate kinase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
WA1_38880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.740
WA1_16600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.728
WA1_02615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.687
WA1_14730
Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
WA1_28630
Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
WA1_37760
Chaperone protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
argG
Argininosuccinate synthase; Catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
  0.650
WA1_25125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.631
argD
Acetylornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
  
 0.631
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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